Selected Publications for ATTO 520:
Jung, Y. Jeong, Y. Xu, J. Yi, M. Kim, H.-J. Jeong, S. Shin, Y.-H. Yang, J. Son, C. Sung, Production and engineering of nanobody-based quenchbody sensors for detecting recombinant human growth hormone and its isoforms, Drug Testing and Analysis 15, 1439 (2023).
Y.-F. Liang, J.-D. Li, R.-Y. Fang, Z.-L. Xu, L. Luo, Z.-J. Chen, J.-Y. Yang, Y.-D. Shen, H. Ueda, B. Hammock, H. Wang, Design of an Antigen-Triggered Nanobody-Based Fluorescence Probe for PET Immunoassay to Detect Quinalphos in Food Samples, Analytical Chemistry 95, 12321 (2023).
S. Shinde, N. Kulkarni, B. Sahu, Synthesis and Investigation of Backbone Modified Squaramide Dipeptide Self-Assembly, ACS applied bio materials 6, 507 (2023).
J. van den Bor, N. Bergkamp, S. Anbuhl, F. Dekker, D. Comez, C. Perez Almeria, R. Bosma, C. White, L. Kilpatrick, S. Hill, M. Siderius, M. Smit, R. Heukers, NanoB2 to monitor interactions of ligands with membrane proteins by combining nanobodies and NanoBRET, Cell Reports Methods 3, 100422 (2023).
P. Cesana, C. Page, D. Harris, M. Emmanuel, T. Hyster, G. Schlau-Cohen, Photoenzymatic Catalysis in a New Light, Journal of the American Chemical Society 144, 17516 (2022).
H. Li, B. Zhu, B. Li, L. Chen, X. Ning, H. Dong, J. Liang, X. Yang, J. Dong, H. Ueda, Isolation of a human SARS-CoV-2 neutralizing antibody from a synthetic phage library and its conversion to fluorescent biosensors, Scientific Reports 12, 1 (2022).
S. Shinde, N. Kulkarni, B. Sahu, Synthesis and Investigation of Backbone Modified Squaramide Dipeptide Self-Assembly, ACS applied bio materials 6, 507 (2023).
M. Thommen, A. Draycheva, M. Rodnina, Ribosome selectivity and nascent chain context in modulating the incorporation of fluorescent non-canonical amino acid into proteins, Scientific Reports 12, 12848 (2022).
B. Zhu, N. Nosaka, S. Kanamaru, J. Dong, Y. Dai, A. Inoue, Y. Yang, K. Kobayashi, T. Kitaguchi, H. Iwasaki, R. Koike, K. Wakabayashi, H. Ueda, Rapid and sensitive SARS-CoV-2 detection using a homogeneous fluorescent immunosensor Quenchbody with crowding agents, The Analyst 147, 4971 (2022).
H. Li, X. Li, L. Chen, B. Li, H. Dong, H. Liu, X. Yang, H. Ueda, J. Dong, Quench-Release-Based Fluorescent Immunosensor for the Rapid Detection of Tumor Necrosis Factor α, ACS Omega 6, 31009 (2021).
R. Pioli, M. Fernandez-Rodriguez, F. Grillo, L. Alvarez, R. Stocker, L. Isa, E. Secchi, Sequential capillarity-assisted particle assembly in a microfluidic channel, Lab on a Chip 21, 888 (2021).
A. Sapuri-Butti, L. Wang, S. Tetali, J. Rutledge, A. Parikh, Interactions of different lipoproteins with supported phospholipid raft membrane (SPRM) patterns to understand similar in-vivo processes, Biochimica et Biophysica Acta (BBA) - Biomembranes 1863, 183535 (2021).
L. Zhang, H. Dong, H. Li, B. Li, G. Zhao, H. Cai, L. Chen, J. Dong, Novel signal-on immunosensors for rapid and sensitive detection of Microcystin-LR, Microchemical Journal 167, 106295 (2021).
A. Inoue, Y. Ohmuro-Matsuyama, T. Kitaguchi, H. Ueda, Creation of a Nanobody-Based Fluorescent Immunosensor Mini Q-body for Rapid Signal-On Detection of Small Hapten Methotrexate, ACS Sensors 5, 3457 (2020).
H.-J. Jeong, J. Dong, H. Ueda, Single-Step Detection of the Influenza Virus Hemagglutinin Using Bacterially-Produced Quenchbodies, Sensors 19, 52 (2019).
G. Lin, M. Lewandowska, Plasmon-enhanced fluorescence provided by silver nanoprisms for sensitive detection of sulfide, Sensors and Actuators B: Chemical 292, 241 (2019).
A. Roloff, N. Nirmalananthan-Budau, B. Rühle, H. Borcherding, T. Thiele, U. Schedler, U. Resch-Genger, Quantification of Aldehydes on Polymeric Microbead Surfaces via Catch and Release of Reporter Chromophores, Analytical Chemistry 91, 8827 (2019).
A. Sasao, M. Takaki, H.‐J. Jeong, K. Yonemitsu, Y. Ohtsu, H. Tsutsumi, S. Furukawa, H. Morioka, H. Ueda, Y. Nishitani, Development of a fluvoxamine detection system using a Quenchbody, a novel fluorescent biosensor, Drug Testing and Analysis 11, 601 (2019).
X. Zambrana-Puyalto, N. Maccaferri, P. Ponzellini, G. Giovannini, F. de Angelis, D. Garoli, Site-selective functionalization of plasmonic nanopores for enhanced fluorescence emission rate and Förster resonance energy transfer, Nanoscale Advances (2019).
C. Bayas, J. Wang, M. Lee, J. Schrader, L. Shapiro, W. Moerner, Spatial organization and dynamics of RNase E and ribosomes in Caulobacter crescentus, Proceedings of the National Academy of Sciences 115, E3712-E3721 (2018).
J. Dong, R. Fujita, T. Zako, H. Ueda, Construction of Quenchbodies to detect and image amyloid β oligomers, Analytical Biochemistry 550, 61 (2018).
D. Hammler, A. Marx, A. Zumbusch, Fluorescence-Lifetime-Sensitive Probes for Monitoring ATP Cleavage, Chemistry (Weinheim an der Bergstrasse, Germany) 24, 15329 (2018).
K. Kornicka, R. Walczak, A. Mucha, K. Marycz, Released from ZrO2/SiO2 coating resveratrol inhibits senescence and oxidative stress of human adipose-derived stem cells (ASC), Open Chemistry 16, 481 (2018).
S. Zhao, J. Dong, H.-J. Jeong, K. Okumura, H. Ueda, Rapid detection of the neonicotinoid insecticide imidacloprid using a quenchbody assay, Analytical and Bioanalytical Chemistry 410, 4219 (2018).
S. Altrichter, M. Haase, B. Loh, A. Kuhn, S. Leptihn, Mechanism of the Spontaneous and Directional Membrane Insertion of a 2-Transmembrane Ion Channel, ACS chemical biology 12, 380 (2017).
S. Daly, C. Choi, F. Chirot, L. MacAleese, R. Antoine, P. Dugourd, Action-Self Quenching, Analytical chemistry 89, 4604 (2017).
H.-J. Jeong, T. Kawamura, J. Dong, H. Ueda, Q-Bodies from Recombinant Single-Chain Fv Fragment with Better Yield and Expanded Palette of Fluorophores, ACS Sensors 1, 88 (2016).
T. Niehörster, A. Löschberger, I. Gregor, B. Krämer, H.-J. Rahn, M. Patting, F. Koberling, J. Enderlein, M. Sauer, Multi-target spectrally resolved fluorescence lifetime imaging microscopy, Nature Methods 13, 257 (2016).
H. Ohashi, T. Matsumoto, H.-J. Jeong, J. Dong, R. Abe, H. Ueda, Insight into the Working Mechanism of Quenchbody: Transition of the Dye around Antibody Variable Region That Fluoresces upon Antigen Binding, Bioconjugate Chemistry 27, 2248 (2016).
J.-W. Janiesch, M. Weiss, G. Kannenberg, J. Hannabuss, T. Surrey, I. Platzman, J. Spatz, Key Factors for Stable Retention of Fluorophores and Labeled Biomolecules in Droplet-Based Microfluidics, Analytical Chemistry 87, 2063 (2015).
A. Löschberger, T. Niehörster, M. Sauer, Click chemistry for the conservation of cellular structures and fluorescent proteins, Biotechnology Journal 9, 693 (2014).
N.J.M. Sanghamitra, H. Inaba et al., Plasma membrane translocation of a protein needle based on a triple-stranded b-helix motif, Mol. Biosyst. 10, 2677 (2014).
S. Roy, A. Baral, A. Banerjee, Tuning of Silver Cluster Emission from Blue to Red Using a Bio-active Peptide in Water, ACS Appl. Mater. Interfaces 6, 4050 (2014).
F. Hövelman, I. Gaspar et al., Brightness Enhanced DNA FIT-Probes for Wash-Free RNA Imaging in Tissue, J. Am. Chem. Soc. 135, 19025 (2013)
S. Winterfeld, S. Ernst et al., Real Time Observation of Single Membrane Protein Insertion Events by the Escherichia coli Insertase YidC, PLoS ONE 8, e59023 (2013).
H.-J. Jeong, Y. Ohmuro Matsuyama et al., Detection of vimentin serine phosphorylation by multicolor Quenchbodies, Biosensors and Bioelectronics 40, 17 (2013).
S. Nanguneri, B. Flottmann et al., Three-Dimensional, Tomographic Super-Resolution Fluorescence Imaging of Serially Sectioned Thick Samples, PLoS ONE 7, e38098 (2012).
V. Mekler, O. Paplova, K. Severinov, Interaction of Escherichia coli RNA Polymerase s70 Subunit with Promotor Elements in the Context of Free s70, RNA Polymerase Holoenzyme, and the b’-s70 Complex, J. Biol. Chem. 286, 270 (2011).
K. Lymperopoulos, A. Kiel et al., Fluorescent Probes and Delivery Methods for Single-Molecule Experiments, ChemPhysChem 11, 43 (2010).
M. Kumbhakar, A. Kiel et al., Single-Molecule Fluorescence Studies Reveal Long-Range Electron-Transfer Dynamics Through Double-Stranded DNA, ChemPhysChem 10, 629 (2009).
S. van der Linde et al., Multicolor Photoswitching Microscopy for Subdifraction-Resolution Fluorescence Imaging, Photochem. Photobiol. Sci. 2009, doi: 10.1039/b822533h
A.Z. Ruiz, H. Li, G. Calzaferri, Organizing Supramolecular Functional Dye-Zeolite Crystals, Angew. Chem. Int. Ed. 45, 5282 (2006).
C.A. Teske, M. Schroeder, R. Simon, J. Hubbuch, Protein-Labling Effects in Confocal Laser Scanning Microscopy, J. Phys. Chem. 109, 13811 (2005).
S. Huber, G. Calzaferri, Sequential Functionalization of the Channel Entrances of Zeolite L Crystals, Angew. Chem. Int. Ed. 43, 6906 (2004).
