Selected Publications for ATTO 590:
P. Cesana, C. Page, D. Harris, M. Emmanuel, T. Hyster, G. Schlau-Cohen, Photoenzymatic Catalysis in a New Light, Journal of the American Chemical Society 144, 17516 (2022).
K. Halicka, F. Meloni, M. Czok, K. Spychalska, S. Baluta, K. Malecha, M. Pilo, J. Cabaj, New Trends in Fluorescent Nanomaterials-Based Bio/Chemical Sensors for Neurohormones Detection-A Review, ACS Omega 7, 33749 (2022).
R. Moradi, N. Khalili, N. Septiani, C.-H. Liu, E. Doustkhah, Y. Yamauchi, S. Rotkin, Nanoarchitectonics for Abused-Drug Biosensors, Small 18, 2104847 (2022).
H. Seo, H. Lee, Spatiotemporal control of signal-driven enzymatic reaction in artificial cell-like polymersomes, Nature Communications 13, 1 (2022).
S.-H. Sheu, S. Upadhyayula, V. Dupuy, S. Pang, F. Deng, J. Wan, D. Walpita, H. Pasolli, J. Houser, S. Sanchez-Martinez, S. Brauchi, S. Banala, M. Freeman, C. Xu, T. Kirchhausen, H. Hess, L. Lavis, Y. Li, S. Chaumont-Dubel, D. Clapham, A serotonergic axon-cilium synapse drives nuclear signaling to alter chromatin accessibility, Cell 185, 3390-3407.e18 (2022).
S. Takamori, P. Cicuta, S. Takeuchi, L. Di Michele, DNA-assisted selective electrofusion (DASE) of Escherichia coli and giant lipid vesicles, Nanoscale 14, 14255 (2022).
E. Alphandéry, Light-Interacting iron-based nanomaterials for localized cancer detection and treatment, Acta Biomaterialia 124, 50 (2021).
N. Bourebaba, K. Kornicka-Garbowska, K. Marycz, L. Bourebaba, A. Kowalczuk, Laurus nobilis ethanolic extract attenuates hyperglycemia and hyperinsulinemia-induced insulin resistance in HepG2 cell line through the reduction of oxidative stress and improvement of mitochondrial biogenesis – Possible implication in pharmacotherapy, Mitochondrion 59, 190 (2021).
A. Dondzillo, H. Takeda, S. Gubbels, Sex difference in the efferent inner hair cell synapses of the aging murine cochlea, Hearing Research 404, 108215 (2021).
P. Hedde, R. Cinco, L. Malacrida, A. Kamaid, E. Gratton, Phasor-based hyperspectral snapshot microscopy allows fast imaging of live, three-dimensional tissues for biomedical applications, Communications Biology 4, 1 (2021).
T. Hong, R. Zheng, L. Qiu, S. Zhou, H. Chao, Y. Li, W. Rui, P. Cui, X. Ni, S. Tan, P. Jiang, J. Wang, Fluorescence coupled capillary electrophoresis as a strategy for tetrahedron DNA analysis, Talanta 228, 122225 (2021).
M. Hwang, A. Jang, D.-K. Lim, Comparative study of fluorescence and surface-enhanced Raman scattering with magnetic microparticle-based assay for target bacterial DNA detection, Sensors and Actuators B: Chemical 329, 129134 (2021).
Y. Li, X. Huang, J. Ren, Analysis of protein phosphorylation in solution and in cells by using an ATP analogue in combination with fluorescence techniques, The Analyst 146, 4506 (2021).
C. Millan, M. Francis, N. Khandelwal, V. Thompson, T. Thaker, T. Tomasiak, A Conserved Motif in Intracellular Loop 1 Stabilizes the Outward-Facing Conformation of TmrAB, Journal of Molecular Biology, 166834 (2021).
R. Moradi, N. Khalili, N. Septiani, C.-H. Liu, E. Doustkhah, Y. Yamauchi, S. Rotkin, Nanoarchitectonics for Abused-Drug Biosensors, Small 18, 2104847 (2022).
A. Remes, A. Wagner, N. Schmiedel, M. Heckmann, T. Ruf, L. Ding, A. Jungmann, F. Senger, H. Katus, N. Ullrich, N. Frey, M. Hecker, O. Müller, AAV-mediated expression of NFAT decoy oligonucleotides protects from cardiac hypertrophy and heart failure, Basic Research in Cardiology 116, 1 (2021).
J. Woznicki, N. Saini, P. Flood, S. Rajaram, C. Lee, P. Stamou, A. Skowyra, M. Bustamante-Garrido, K. Regazzoni, N. Crawford, S. McDade, D. Longley, P. Aza-Blanc, F. Shanahan, S. Zulquernain, J. McCarthy, S. Melgar, B. McRae, K. Nally, TNF-α synergises with IFN-γ to induce caspase-8-JAK1/2-STAT1-dependent death of intestinal epithelial cells, Cell Death & Disease 12, 1 (2021).
R. Wu, J. Högberg, M. Adner, U. Stenius, H. Zheng, Crystalline silica particles induce DNA damage in respiratory epithelium by ATX secretion and Rac1 activation, Biochemical and Biophysical Research Communications 548, 91 (2021).
A. Al Masud, W. Martin, F. Moonschi, S. Park, B. Srijanto, K. Graham, C. Collier, C. Richards, Mixed metal zero-mode guides (ZMWs) for tunable fluorescence enhancement, Nanoscale Advances 2, 1894 (2020).
M. Alicka, K. Kornicka-Garbowska, K. Kucharczyk, M. Kępska, M. Rӧcken, K. Marycz, Age-dependent impairment of adipose-derived stem cells isolated from horses, Stem Cell Research & Therapy 11, 4 (2020).
N. Arndt, H. Tran, R. Zhang, Z. Xu, H. Ta, Different Approaches to Develop Nanosensors for Diagnosis of Diseases, Advanced science (Weinheim, Baden-Wurttemberg, Germany) 7, 2001476 (2020).
F. Li, L. Li, L. Wu, L. Zhang, L. Zhang, C. Yang, C. Liu, Electrostatic adsorption of a fluorophores-modified light-harvesting complex II on TiO2 photoanodes enhances photovoltaic performance, Journal of Power Sources 449, 227604 (2020).
M. Solomon, J. Abendroth, L. Poulikakos, J. Hu, J. Dionne, Fluorescence-Detected Circular Dichroism of a Chiral Molecular Monolayer with Dielectric Metasurfaces, Journal of the American Chemical Society 142, 18304 (2020).
A. Teodor, B. Bruce, Putting Photosystem I to Work, Trends in Biotechnology 38, 1329 (2020).
S. Ballweg, E. Sezgin, M. Doktorova, R. Covino, J. Reinhard, D. Wunnicke, I. Hänelt, I. Levental, G. Hummer, R. Ernst, Regulation of lipid saturation without sensing membrane fluidity, Nature Communications 11, 1 (2020).
X. Chen, D. Zhang, N. Su, B. Bao, X. Xie, F. Zuo, L. Yang, H. Wang, L. Jiang, Q. Lin, M. Fang, N. Li, X. Hua, Z. Chen, C. Bao, J. Xu, W. Du, L. Zhang, Y. Zhao, L. Zhu, J. Loscalzo, Y. Yang, Visualizing RNA dynamics in live cells with bright and stable fluorescent RNAs, Nature Biotechnology 37, 1287 (2019).
T. Godjevargova, Y. Ivanov, M. Atanasova, Z. Becheva, A. Zherdev, Magnetic nanoparticles based fluorescence immunoassay for food contaminants, Food Science and Applied Biotechnology 2, 38 (2019).
S. Nir, D. Zanuy, T. Zada, O. Agazani, C. Aleman, D. Shalev, M. Reches, Tailoring the self-assembly of a tripeptide for the formation of antimicrobial surfaces, Nanoscale 11, 8752 (2019).
S. Samanta, Y. He, A. Sharma, J. Kim, W. Pan, Z. Yang, J. Li, W. Yan, L. Liu, J. Qu, J. Kim, Fluorescent Probes for Nanoscopic Imaging of Mitochondria, Chem 5, 1697 (2019).
A.R. Sekhar, B. Mallik, V. Kumar, J. Sankar, A cell-permeant small molecule for the super-resolution imaging of the endoplasmic reticulum in live cells, Organic & Biomolecular Chemistry 17, 3732 (2019).
A. Sulatskaya, M. Sulatsky, I. Antifeeva, I. Kuznetsova, K. Turoverov, Structural Analogue of Thioflavin T, DMASEBT, as a Tool for Amyloid Fibrils Study, Analytical Chemistry 91, 3131 (2019).
R. Trachman, A. Ferré-D'Amaré, Tracking RNA with light, Quarterly Reviews of Biophysics 52 (2019).
Y. Wu, H. Ruan, Z. Dong, R. Zhao, J. Yu, X.-J. Tang, X. Kou, X. Zhang, M. Wu, F. Luo, J. Yuan, X. Fang, Fluorescent Polymer Dot-Based Multicolor Stimulated Emission Depletion Nanoscopy with a Single Laser Beam Pair for Cellular Tracking, Analytical Chemistry (2020).
X. Zambrana-Puyalto, N. Maccaferri, P. Ponzellini, G. Giovannini, F. de Angelis, D. Garoli, Site-selective functionalization of plasmonic nanopores for enhanced fluorescence emission rate and Förster resonance energy transfer, Nanoscale Advances (2019).
A. Joshi, V. Singh, A. Gahane, A. Thakur, Biodegradable Nanoparticles Containing Mechanism Based Peptide Inhibitors Reduce Polyglutamine Aggregation in Cell Models and Alleviate Motor Symptoms in a Drosophila Model of Huntington's Disease, ACS chemical neuroscience 10, 1603 (2019).
K. Okamoto, Y. Sako, Single-Molecule Förster Resonance Energy Transfer Measurement Reveals the Dynamic Partially Ordered Structure of the Epidermal Growth Factor Receptor C-Tail Domain, The Journal of Physical Chemistry B 123, 571 (2019).
C. Steinmetzger, N. Palanisamy, K. Gore, C. Höbartner, A Multicolor Large Stokes Shift Fluorogen-Activating RNA Aptamer with Cationic Chromophores, Chemistry (Weinheim an der Bergstrasse, Germany) 25, 1931 (2019).
M. Baumdick, M. Gelléri, C. Uttamapinant, V. Beránek, J. Chin, P. Bastiaens, A conformational sensor based on genetic code expansion reveals an autocatalytic component in EGFR activation, Nature Communications 9, 3847 (2018).
E. Braselmann, A. Wierzba, J. Polaski, M. Chromiński, Z. Holmes, S.-T. Hung, D. Batan, J. Wheeler, R. Parker, R. Jimenez, D. Gryko, R. Batey, A. Palmer, A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells, Nature chemical biology 14, 964 (2018).
V. Ghodsi, P. Radovanovic, Turning Weakly Luminescent SnO2 Nanocrystals into Tunable and Efficient Light Emitters by Aliovalent Alloying, Chemistry of Materials 30, 3578 (2018).
H. Mazal, H. Aviram, I. Riven, G. Haran, Effect of ligand binding on a protein with a complex folding landscape, Physical Chemistry Chemical Physics 20, 3054 (2018).
L. Zhou, K.-J. Chen, J. Ramsey, C. Almlie, S. Burrows, Lighting up Plasmonic Nanostar Colloids for Metal-Enhanced Fluorescence under Two-Photon Near-Infrared Excitation, The Journal of Physical Chemistry C 122, 19823 (2018).
S. Goetzl, C. Teutloff, T. Werther, S. Hennig, J.-H. Jeoung, R. Bittl, H. Dobbek, Protein Dynamics in the Reductive Activation of a B12-Containing Enzyme, Biochemistry 56, 5496 (2017).
S.-H. Lee, D. Jo, B. Kim, D.-H. Yoon, H. Chae, H.-K. Chung, S. Cho, Hybrid color-conversion layers for white emission from fluorescent blue organic light-emitting diodes, Current Applied Physics 17, 1108 (2017).
S. Aleksenko, M. Matczuk, A. Timerbaev, Characterization of interactions of metal-containing nanoparticles with biomolecules by CE, Electrophoresis 38, 1661 (2017).
R. Arif, M. Zaradzki, A. Remes, P. Seppelt, R. Kunze, H. Schröder, S. Schwill, S. Ensminger, P. Robinson, M. Karck, O. Müller, M. Hecker, A. Wagner, K. Kallenbach, AP-1 Oligodeoxynucleotides Reduce Aortic Elastolysis in a Murine Model of Marfan Syndrome, Molecular therapy. Nucleic acids 9, 69 (2017).
U. Bhattacharjee, L. Men, B. Rosales, S. Alvarado, J. Vela, J. Petrich, Using ATTO Dyes To Probe the Photocatalytic Activity of Au–CdS Nanoparticles, The Journal of Physical Chemistry C 121, 676 (2017).
A. Johnson, P. Bao, C. Hurley, M. Cartron, S. Evans, C. Hunter, G. Leggett, Simple, Direct Routes to Polymer Brush Traps and Nanostructures for Studies of Diffusional Transport in Supported Lipid Bilayers, Langmuir 33, 3672 (2017).
A. Milosevic, L. Rodriguez-Lorenzo, S. Balog, C. Monnier, A. Petri-Fink, B. Rothen-Rutishauser, Assessing the Stability of Fluorescently Encoded Nanoparticles in Lysosomes by Using Complementary Methods, Angewandte Chemie (International ed. in English) 56, 13382 (2017).
J. Dancourt, H. Zheng, F. Bottanelli, E. Allgeyer, J. Bewersdorf, M. Graham, X. Liu, J. Rothman, G. Lavieu, Small cargoes pass through synthetically glued Golgi stacks, FEBS Letters 590, 1675 (2016).
P. Gordiichuk, D. Rimmerman, A. Paul, D. Gautier, A. Gruszka, M. Saller, J. de Vries, G.-J. Wetzelaer, M. Manca, W. Gomulya, M. Matmor, E. Gloukhikh, M. Loznik, N. Ashkenasy, P. Blom, M. Rögner, M. Loi, S. Richter, A. Herrmann, Filling the Green Gap of a Megadalton Photosystem I Complex by Conjugation of Organic Dyes, Bioconjugate Chemistry 27, 36 (2016).
O. Hassan Omar, S. La Gatta, R. Tangorra, F. Milano, R. Ragni, A. Operamolla, R. Argazzi, C. Chiorboli, A. Agostiano, M. Trotta, G. Farinola, Synthetic Antenna Functioning As Light Harvester in the Whole Visible Region for Enhanced Hybrid Photosynthetic Reaction Centers, Bioconjugate Chemistry 27, 1614 (2016).
S. Meyer, B. Ozbay, M. Potcoava, E. Salcedo, D. Restrepo, E. Gibson, Super-resolution imaging of ciliary microdomains in isolated olfactory sensory neurons using a custom two-color stimulated emission depletion microscope, Journal of Biomedical Optics 21, 66017 (2016).
J. Wang, C. Zhang, L. Liu, K. Kalesh, L. Qiu, S. Ding, M. Fu, L.-Q. Gao, P. Jiang, A capillary electrophoresis method to explore the self-assembly of a novel polypeptide ligand with quantum dots, Electrophoresis 37, 2156 (2016).
V. Chirmanov, P.C. Stanish, Distance-Dependent Energy Transfer between Ga2O3 Nanocrystal Defect States and Conjugated Organic Fluorophores in Hybrid White-Light-Emitting Nanophosphors, J. Phys. Chem. C 119, 5687 (2015).
I. Hadar, S. Halivni et al., Dimensionality Effects on Fluorescence Resonance Energy Transfer between Single Semiconductor Nanocrystals and Multiple Dye Acceptors, J. Phys. Chem. C 119, 3849 (2015).
U. Kaiser, D. Jimenez de Aberasturi et al., Determining the exact number of dye molecules attached to colloidal CdSe/ZnS quantum dots in Förster resonant energy transfer assemblies, J. Appl. Phys. 117, 024701 (2015).
M.A. Rutherford, Resolving the Structure of Inner Ear Ribbon Synapses With STED Microscopy, Synapse 69, 242 (2015).
U. Bhattacharjee, C. Beck et al., Tryptophan and ATTO 590: Mutual Fluorescence Quenching and Exciplex Formation, J. Phys. Chem. B 118, 8471 (2014).
B. Rothen-Rutishauser, D.A. Kuhn et al., Quantification of gold nanoparticle cell uptake under controlled biological conditions and adequate resolution, Nanomedicine 9, 607 (2014).
S. Ivanova, K. Gabrovska, T. Godjevargova, Fluorescent immunoassay for determination of penicillin and sulphonamide residues in milk using carboxylic magnetic nanoparticles, Int. J. Dairy Techn. 67, 521 (2014).
S.A. Meyer, B. Ozbay et al., Super-resolution imaging of ciliary microdomains in isolated olfactory sensory neurons using a custom STED microscope, Proc. SPIE 8950, 8950W (2014).
U. Kaiser, D. Jimenez de Aberasturi et al., Multiplexed measurements by time resolved spectroscopy using colloidal CdSe/ZnS quantum dots, Appl. Phys. Lett. 104, 041901 (2014).
A. Sitt, N. Even-Dar, Analysis of Shape and Dimensionality Effects on Fluorescence Resonance Energy Transfer from Nanocrystals to Multiple Acceptors, J. Phys. Chem. C 117, 22186 (2013).
P. Magnaghi, R. D’Alessio et al., Covalent and allosteric inhibitors of the ATPase VCP/p97 induce cancer cell death, Nat. Chem. Biol. 9, 548 (2013).
Y. Hua, A. Woehler et al., Blocking Endocytosis Enhances Short-Term Synaptic Depression under Conditions of Normal Availability of Vesicles, Neuron 80, 343 (2013).
R. Doshi, H.W. an Veen, Substrate Binding Stabilizes a Pre-translocation Intermediate in the ATP-binding Cassette Transport Protein MsbA, J. Biol. Chem. 228, 21638 (2013).
R. Doshi, A. Ali et al., Molecular Disruption of the Power Stroke in the ATP-binding Cassette Transport Protein MsbA, J. Biol. Chem. 288, 6801 (2013).
C. Arya, J.G. Kralj et al., Capturing rare cells from blood using a packed bed of custom-synthesized chitosan microparticles, J. Mater. Chem. B 1, 4313 (2013).
S. Halivni, A. Sitt et al., Effect of Nanoparticle Dimensionality on Fluorescence Resonance Energy Transfer in Nanoparticle Dye Conjugated Systems, ACS Nano 6, 2758 (2012).
S. Seidu-Larry, B. Krieg et al., A modified guanosine phosphoramidite for click functionalization of RNA on the sugar edge, Chem. Commun. 48, 11014 (2012).
R. Freeman, B. Willner, I. Willner, Integrated Biomolecule - Quantum Dot Hybrid Systems for Bioanalytical Applications, J. Phys. Chem. Lett. 2, 2667 (2011).
J. Bückers, D. Wildanger et al., Simultaneous multi-lifetime multi-color STED imaging for colocalization analyses, Optics Express 19, 3130 (2011).
A. Z. Abbasi, F. Amin et al., How Colloidal Nanoparticles Could Facilitate Multiplexed Measurements of Different Analytes with Analyte-Sensitive Organic Fluorophores, ACSNano 5, 21 (2011).
Z. Ali, A. Z. Abbasi et al., Multifunctional Nanoparticles for Dual Imaging, Anal. Chem. 83, 2877 (2011).
K. Seyfert, T. Oosaka et al., Subunit rotation in a single F0F1-ATP synthase in a living bacterium monitored by FRET, Proc. SPIE 7905, 79050K (2011).
U. V. Schneider, N. D. Mikkelsen et al., Optimal design of parallel triplex forming oligonucleotides containing Twisted Intercalating Nucleic Acids – TINA, Nucleic Acids Res. 38, 4394 (2010).
A. D. Lehmann, W. J. Parak et al., Fluorescent-Magnetic Hybrid Nanoparticles Induce a Dose-Dependent Increase in Proinflammatory Response in Lung Cells in vitro Correlated with Intracellular Localization, Small 6, 753 (2010).
R. Freeman, L. Bahshi, T. Finder, R. Gill, I. Willner, Competitive analysis of saccharides or dopamine by boronic acid-functionalized CdSe-ZnS quantum dots, Chem. Comm., 764, (2009).
J.J. Reina-Pinto, D. Voisin et al.; Misexpression of FATTY ACID ELONGATION1 in the Arabidopsis Epidermis Induces Cell Death and Suggests a Critical Role for Phospholipase A2 in This Process, The Plant Cell 21, 1252 (2009).
D. Wildanger, R. Medda, L. Kastrup, S.W. Hell, A compact STED microscope providing 3D nanoscale resolution, J. Microscopy (2009). [doi: 10.1111/j.1365-2818.2009.03188.x]
A.V. Yakovlev et al., Wrapping Nanocrystals with an Amphiphilic Polymer Preloaded with Fixed Amounts of Fluorophore Generates FRET-Based Nanoprobes with a Controlled Donor/Acceptor Ratio, Langmuir 25, 3232 (2009).
M.M. Marani et al., Screening on One-Bead-One-Peptide Combinatorial Library Using Red Fluorescent Dyes. Presence of Positive and False Positive Beads, J. Combinatorial Chem. 11, 146 (2009).
D. Wildanger, E. Rittweger, L. Kastrup, S.W. Hell, STED microscopy with a supercontinuum laser source, Optics Express 16, 9614 (2008).
A. Chmyrov, J. Arden-Jacob, A. Zilles, K.-H. Drexhage, J. Widengren, Charcterization of new fluorescent labels for ultra-high resolution microscopy, Photochem. Photobiol. Sci. 7, 1378 (2008).
M.T. Fernández-Arguelles, A. Yakovlev et al., Synthesis and Characterization of Polymer-Coated Quantum Dots with Integrated Acceptor Dyes as FRET-Based Nanoprobes, Nano Lett. 7, 2613 (2007).
M. Antonik, S. Felekyan, A. Gaiduk, C.A.M. Seidel, Separating Structural Heterogeneities from Stochastic Variations in Fluorescence Resonance Energy Transfer Distributions via Photon Distribution Analysis, J. Phys. Chem. B 110, 6970 (2006).
A. Mokhir, A. Kiel, D.-P. Herten, R. Kraemer, Fluorescent Sensor for Cu2+ with a Tunable Emission Wavelength, Inorg. Chem. 44, 5661 (2005).
T. Gensch, M. Böhmer, P.F. Aramendia, Single Molecule Blinking and Photobleaching Separated by Wide-Field Fluorescence Microscopy, J. Phys. Chem. A 109, (2005).
E.M.H.P. van Dijk, J. Hernando, J.-J. Garcia-Lopez et al., Single-Molecule Pump-Probe Detection Resolves Ultrafast Pathways in Individual and Coupled Quantum Systems, Phys. Rev. Lett. 94, 078302 (2005).
P. Tinnefeld, M. Heilemann, M. Sauer, Design of Molecular Photonic Wires Based on Multistep Electronic Excitation Transfer, ChemPhysChem 6, 217 (2005).
M. Garcia-Parajo, J. Hernando, G.Sanchez-Mosteiro et al., Energy transfer in single-molecule photonic wires, ChemPhysChem 6, 819 (2005).
M. Heilemann, P. Tinnefeld, G. Sanchez-Mosteiro, M.G. Parajo, N.F. van Hulst, M. Sauer, Multistep Energy Transfer in Single Molecular Photonic Wires, J. Am. Chem. Soc. 126, 6514 (2004).
