Selected Publications for ATTO 680:
S. Calabrese, A. Markl, M. Neugebauer, S. Krauth, N. Borst, F. von Stetten, M. Lehnert, Reporter emission multiplexing in digital PCRs (REM-dPCRs), The Analyst 9, 143 (2023).
A. Prabhakar, S. Hu, J. Tang, P. Ghatpande, G. Lagna, X. Jiang, A. Hata, Essential role of the amino-terminal region of Drosha for the Microprocessor function, iScience 26, 107971 (2023).
H. Wang, D. Lee, Y. Cao, X. Bi, J. Du, K. Miao, L. Wei, Bond-selective fluorescence imaging with single-molecule sensitivity, Nature photonics 17, 846 (2023).
J. Zhu, R. Hieronymus, S. Müller, A Hairpin Ribozyme Derived Spliceozyme, ChemBioChem 24, e202300204 (2023).
J. Ariztia, K. Solmont, N. Moïse, S. Specklin, M. Heck, S. Lamandé-Langle, B. Kuhnast, PET/Fluorescence Imaging, Bioconjugate Chemistry 33, 24 (2022).
N. Gimber, S. Strauss, R. Jungmann, J. Schmoranzer, Simultaneous Multicolor DNA-PAINT without Sequential Fluid Exchange Using Spectral Demixing, Nano Letters 22, 2682 (2022).
M. Martinez, J. Carder, E. Taylor, E. Jacobo, C. Kang, J. Brozik, Thermodynamic Driving Forces of Redox-Dependent CPR Insertion into Biomimetic Endoplasmic Reticulum Membranes, The Journal of Physical Chemistry B 126, 1691 (2022).
L. Ostersehlt, D. Jans, A. Wittek, J. Keller-Findeisen, K. Inamdar, S. Sahl, S. Hell, S. Jakobs, DNA-PAINT MINFLUX nanoscopy, Nature Methods 19, 1072 (2022).
M. Barski, T. Vanzo, X. Zhao, S. Smith, A. Ballandras-Colas, N. Cronin, V. Pye, S. Hughes, T. Burke, P. Cherepanov, G. Maertens, Structural basis for the inhibition of HTLV-1 integration inferred from cryo-EM deltaretroviral intasome structures, Nature Communications 12, 1 (2021).
Y.-F. He, J.-W. Chen, C.-Z. An, X.-L. Hou, Z.-T. Zhong, C.-Q. Li, W. Chen, B. Liu, Y.-D. Zhao, Labeling of liver cells with CdSe/ZnS quantum dot-based fluorescence probe below freezing point, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 263, 120203 (2021).
R. Kasprzyk, J. Jemielity, Enzymatic Assays to Explore Viral mRNA Capping Machinery, ChemBioChem 22, 3236 (2021).
M. Klenner, G. Pascali, M. Massi, B. Fraser, Fluorine-18 Radiolabelling and Photophysical Characteristics of Multimodal PET–Fluorescence Molecular Probes, Chemistry – A European Journal 27, 861 (2021).
J. Maillard, C. Rumble, A. Fürstenberg, Red-Emitting Fluorophores as Local Water-Sensing Probes, The Journal of Physical Chemistry B 125, 9727 (2021).
Y. Li, M. Cho, S. Lee, D.-E. Lee, H. Cheong, Y. Choi, Hydroxychloroquine-loaded hollow mesoporous silica nanoparticles for enhanced autophagy inhibition and radiation therapy, Journal of Controlled Release 325, 100 (2020).
P. Pashazadeh-Panahi, M. Hasanzadeh, Digoxin as a glycosylated steroid-like therapeutic drug, Biomedicine & Pharmacotherapy 123, 109813 (2020).
M. Surin, S. Ulrich, From Interaction to Function in DNA-Templated Supramolecular Self-Assemblies, ChemistryOpen 9, 480 (2020).
T. Gardinier, F. Kohle, J. Peerless, K. Ma, M. Turker, J. Hinckley, Y. Yingling, U. Wiesner, High-Performance Chromatographic Characterization of Surface Chemical Heterogeneities of Fluorescent Organic-Inorganic Hybrid Core-Shell Silica Nanoparticles, ACS Nano 13, 1795 (2019).
Hailong Li, Jesper Vinther Sørensen, Kurt Vesterager Gothelf, Quantitative Detection of Digoxin in Plasma Using Small‐Molecule Immunoassay in a Recyclable Gravity‐Driven Microfluidic Chip, Advanced Science 6 (2019).
C. Zheng, E. Palacios, W. Zhou, W. Hadibrata, L. Sun, Z. Huang, G. Schatz, K. Aydin, C. Mirkin, Tunable Fluorescence from Dye-Modified DNA-Assembled Plasmonic Nanocube Arrays, Advanced Materials 31, e1904448 (2019).
K. Kohlmann, M. Ciorpac, P. Kersten, R. Suciu, E. Taflan, K. Tosic, D. Holostenco, J. Geßner, Development and assessment of a multiplex PCR assay for genetic analyses of microsatellite loci in beluga sturgeon, Huso huso, Genetics of Aquatic Organisms 2, 35 (2018).
B. Miller, T. Wei, C. Fields, P. Sheng, M. Xie, Near-infrared fluorescent northern blot, RNA 24, 1871 (2018).
C. Ricard, E. Arroyo, C. He, C. Portera-Cailliau, G. Lepousez, M. Canepari, D. Fiole, Two-photon probes for in vivo multicolor microscopy of the structure and signals of brain cells, Brain structure & function 223, 3011 (2018).
W. Wang, M. Ramezani, A. Väkeväinen, P. Törmä, J. Rivas, T. Odom, The rich photonic world of plasmonic nanoparticle arrays, Materials Today 21, 303 (2018).
E.-S. Choi, H. Kim, H.-P. Kim, Y. Choi, S.-H. Goh, CD44v8-10 as a potential theranostic biomarker for targeting disseminated cancer cells in advanced gastric cancer, Scientific Reports 7, 4930 (2017).
C. LaBoda, C. Dwyer, A. Lebeck, Exploiting Dark Fluorophore States to Implement Resonance Energy Transfer Pre-Charge Logic, IEEE Micro 37, 52 (2017).
C. LaBoda, A. Lebeck, C. Dwyer, An Optically Modulated Self-Assembled Resonance Energy Transfer Pass Gate, Nano letters 17, 3775 (2017).
A. Rakhymzhan, R. Leben, H. Zimmermann, R. Günther, P. Mex, D. Reismann, C. Ulbricht, A. Acs, A. Brandt, R. Lindquist, T. Winkler, A. Hauser, R. Niesner, Synergistic Strategy for Multicolor Two-photon Microscopy, Scientific Reports 7, 7101 (2017).
M. Göksel, M. Durmus, D. Atilla, Peptide-substituted phthalocyanine photosensitizers, Photochemical & Photobiological Sciences 15, 1318 (2016).
J. Märk, F.-J. Schmitt, J. Laufer, Photoacoustic imaging of the excited state lifetime of fluorophores, Journal of Optics 18, 54009 (2016).
T. Richman, H. Spåhr, J. Ermer, S. Davies, H. Viola, K. Bates, J. Papadimitriou, L. Hool, J. Rodger, N.-G. Larsson, O. Rackham, A. Filipovska, Loss of the RNA-binding protein TACO1 causes late-onset mitochondrial dysfunction in mice, Nature Communications 7, 11884 (2016).
R.C. Gullberg, J.J. Steel, Oxidative stress influences positive strand RNA virus genome synthesis and capping, Virology 475, 219 (2015).
P. Rathinaraj, K. Lee et al., Targeted images of KB cells using folate-conjugated gold nanoparticles, Nanoscale Res. Lett. 10, 5 (2015).
J. Xu, B. Appel et al., RNA Aminoacylation Mediated by Sequential Action of Two Ribozymes and a Nonactivated Amino Acid, ChemBioChem 15, 1200 (2014).
M.F. Ebbens, K. Bienk et al., Extended blood circulation and joint accumulation of a p(HPMA-co-AzMA)-based nanoconjugate in a murine model of rheumatoid arthritis, Mol. Cell. Therapies 2, 29 (2014).
A.-L. Stecklberg, N.H. Gehring, Studying the composition of mRNPs in vitro using splicing-competent cell extracts, Methods 65, 342 (2013).
S. Gwiazda, K. Salomon et al., RNA self-ligation: From oligonucleotides to full length ribozymes, Biochimie 94, 1457 (2012).
E.J.R. Vasseur, A. Polman, Controlled spontaneous emission in plasmonic whispering gallery antennas, Appl. Phys. Lett. 99, 231112 (2011).
A. Kupstat, T. Ritschel, M.U. Kumke, Oxazine Dye-Conjugated DNA Oligonucleotides: Förster Resonance Energy Transfer in View of Molecular Dye−DNA Interactions, Bioconjugate Chem. 22, 2546 (2011).
P. Drake, H.-W. Chang, Y.-J. Lin, The design of a peptide linker group to enhance the SERS signal intensity of an atto680 dye-nanoparticle system, J. Raman Spectrosc. 15, 1248 (2010).
J. Vogelsang, T. Cordes et al., Intrinsically Resolution Enhancing Probes for Confocal Microscopy, Nanolett. 10, 672 (2010).
G. Vecchi, V. Giannini, J. Gomes Rivas, Shaping the Fluorescent Emission by Lattice Resonances in Plasmonic Crystals of Nanoantennas, Phys. Rev. Lett. 102, 146807 (2009).
S. van der Linde et al., Multicolor Photoswitching Microscopy for Subdifraction-Resolution Fluorescence Imaging, Photochem. Photobiol. Sci. 2009, doi: 10.1039/b822533h
S. van der Linde, M. Heilemann, M. Sauer, Photoswitching microscopy with standard fluorophores, Appl. Phys. B 93, 725 (2008).
J. Gomez-Rivas, G. Vecchi, V. Giannini, Surface plasmon polariton-mediated enhancement of the emission of dye molecules on metallic gratings, New J. Phys. 10, 1 (2008)
G. Calzaferri, H. Li, Mimicking the antenna system of green plants, Proc. SPIE 7002, 1 (2008).
I. Drude, S. Vauléon, S. Müller, Twin ribozyme mediated removal of nucleotides from an internal RNA site, Biochem. Res. 363, 24 (2007).
O.L. Muskens, V. Giannini, J.A. Sánchez-Gil et al., Strong Enhancement of the Radiative Decay Rate of Emitters by Plasmonic Nanoantennas, Nano Lett. 7, 2871 (2007).
N. Marmé, J.-P. Knemeyer, Sensitive Bioanalysis – combining single-molecule spectroscopy with mono-labeled self-quenching probes, Anal. Bioanal. Chem. 388, 1075 (2007).
P. Tinnefeld, M. Heilemann, M. Sauer, Design of Molecular Photonic Wires Based on Multistep Electronic Excitation Transfer, ChemPhysChem 6, 217 (2005).
M. Garcia-Parajo, J. Hernando, G.S. Mosteiro et al., Energy transfer in single-molecule photonic wires, ChemPhysChem 6, 819 (2005).
M. Heilemann, P. Tinnefeld, G. Sanchez-Mosteiro, M.G. Parajo, N.F. van Hulst, M. Sauer, Multistep Energy Transfer in Single Molecular Photonic Wires, J. Am. Chem. Soc. 126, 6514 (2004).
S. Huber, G. Calzaferri, Sequential Functionalization of the Channel Entrances of Zeolite L Crystals, Angew. Chem. Int. Ed. 43, 6906 (2004).
S. Huber, G. Calzaferri, Energy Transfer from Dye – Zeolite L Antenna Crystals to Bulk Silicon, ChemPhysChem 5, 239 (2004).
I. Düwel, J. Schorr, P. Peuser, P. Zeller, J. Wolfrum, C. Schulz, Spray diagnostics using an all-solid-state Nd:YAlO3 laser and fluorescence tracers in commercial gasoline and diesel fuels, Appl. Phys. B 79, 249 (2004).
