Selected Publications for ATTO 594:
K. Brandstetter, T. Zülske, T. Ragoczy, D. Hörl, M. Guirao-Ortiz, C. Steinek, T. Barnes, G. Stumberger, J. Schwach, E. Haugen, E. Rynes, P. Korber, J. Stamatoyannopoulos, H. Leonhardt, G. Wedemann, H. Harz, Differences in nanoscale organization of regulatory active and inactive human chromatin, Biophysical Journal 121, 977 (2022).
J. Hooper, D. Budhadev, D. Fernandez Ainaga, N. Hondow, D. Zhou, Y. Guo, Polyvalent Glycan Functionalized Quantum Nanorods as Mechanistic Probes for Shape-Selective Multivalent Lectin-Glycan Recognition, ACS Applied Nano Materials 6, 4201 (2023).
J. Hooper, Y. Liu, D. Budhadev, D. Ainaga, N. Hondow, D. Zhou, Y. Guo, Polyvalent Glycan Quantum Dots as a Multifunctional Tool for Revealing Thermodynamic, Kinetic, and Structural Details of Multivalent Lectin-Glycan Interactions, ACS applied materials & interfaces 14, 47385 (2022).
J. Kehrer, P. Formaglio, J. Muthinja, S. Weber, D. Baltissen, C. Lance, J. Ripp, J. Grech, M. Meissner, C. Funaya, R. Amino, F. Frischknecht, Plasmodium sporozoite disintegration during skin passage limits malaria parasite transmission, EMBO reports 23, e54719 (2022).
M. Takahashi, N. Komura, Y. Yoshida, E. Yamaguchi, A. Hasegawa, H.-N. Tanaka, A. Imamura, H. Ishida, K. Suzuki, H. Ando, Development of lacto-series ganglioside fluorescent probe using late-stage sialylation and behavior analysis with single-molecule imaging, RSC chemical biology 3, 868 (2022).
H. Yoo, C. Davis, An in Vitro Cytomimetic of In-Cell RNA Folding, ChemBioChem 23, e202200406 (2022).
W. Zhu, P. Satterthwaite, P. Jastrzebska-Perfect, R. Brenes, F. Niroui, Nanoparticle contact printing with interfacial engineering for deterministic integration into functional structures, Science Advances 8 (2022).
C. Bou-Nader, F. Muecksch, J. Brown, J. Gordon, A. York, C. Peng, R. Ghirlando, M. Summers, P. Bieniasz, J. Zhang, HIV-1 matrix-tRNA complex structure reveals basis for host control of Gag localization, Cell Host & Microbe 29, 1421-1436.e7 (2021).
A. Christiansen, M. Weiel, A. Winkler, A. Schug, J. Reinstein, The Trimeric Major Capsid Protein of Mavirus is stabilized by its Interlocked N-termini Enabling Core Flexibility for Capsid Assembly, Journal of Molecular Biology 433, 166859 (2021).
E. Courchaine, A. Barentine, K. Straube, D.-R. Lee, J. Bewersdorf, K. Neugebauer, DMA-tudor interaction modules control the specificity of in vivo condensates, Cell 184, 3612-3625.e17 (2021).
K. Day, G. Kago, L. Wang, J. Richter, C. Hayden, E. Lafer, J. Stachowiak, Liquid-like protein interactions catalyse assembly of endocytic vesicles, Nature Cell Biology 23, 366 (2021).
J. Funk, F. Merino, M. Schaks, K. Rottner, S. Raunser, P. Bieling, A barbed end interference mechanism reveals how capping protein promotes nucleation in branched actin networks, Nature Communications 12, 1 (2021).
S. Gamradt, H. Hasselmann, A. Taenzer, J. Brasanac, V. Stiglbauer, A. Sattler, M. Sajitz-Hermstein, S. Kierszniowska, C. Ramien, J. Nowacki, L. Mascarell-Maricic, K. Wingenfeld, D. Piber, A. Ströhle, K. Kotsch, F. Paul, C. Otte, S. Gold, Reduced mitochondrial respiration in T cells of patients with major depressive disorder, iScience 24, 103312 (2021).
M. Gonzalez Pisfil, S. Rohilla, M. König, B. Krämer, M. Patting, F. Koberling, R. Erdmann, Triple-Color STED Nanoscopy, The Journal of Physical Chemistry B 125, 5694 (2021).
G. Kenath, A. Karanastasis, C. Ullal, Super-Resolution Imaging of Spatial Heterogeneities in Model Thermosensitive Hydrogels with Implications for Their Origins, Macromolecules 54, 7743 (2021).
B. Marco-Dufort, J. Willi, F. Vielba-Gomez, F. Gatti, M. Tibbitt, Environment Controls Biomolecule Release from Dynamic Covalent Hydrogels, Biomacromolecules 22, 146 (2021).
M. Nakato, N. Shiranaga, M. Tomioka, H. Watanabe, J. Kurisu, M. Kengaku, N. Komura, H. Ando, Y. Kimura, N. Kioka, K. Ueda, ABCA13 dysfunction associated with psychiatric disorders causes impaired cholesterol trafficking, Journal of Biological Chemistry 296, 100166 (2021).
A. Ritzau-Jost, T. Tsintsadze, M. Krueger, J. Ader, I. Bechmann, J. Eilers, B. Barbour, S. Smith, S. Hallermann, Large, Stable Spikes Exhibit Differential Broadening in Excitatory and Inhibitory Neocortical Boutons, Cell Reports 34, 108612 (2021).
M. Sikora, A. Śmieszek, K. Marycz, Bone marrow stromal cells (BMSCs CD45-/CD44+/CD73+/CD90+) isolated from osteoporotic mice SAM/P6 as a novel model for osteoporosis investigation, Journal of Cellular and Molecular Medicine 25, 6634 (2021).
A. Szalai, C. Zaza, F. Stefani, Super-resolution FRET measurements, Nanoscale 13, 18421 (2021).
R. Toita, T. Kawano, M. Murata, J.-H. Kang, Bioinspired macrophage-targeted anti-inflammatory nanomedicine, Materials Science and Engineering: C 131, 112492 (2021).
D. Unnersjö-Jess, L. Butt, M. Höhne, A. Witasp, L. Kühne, P. Hoyer, J. Patrakka, P. Brinkkötter, A. Wernerson, B. Schermer, T. Benzing, L. Scott, H. Brismar, H. Blom, A fast and simple clearing and swelling protocol for 3D in-situ imaging of the kidney across scales, Kidney International 99, 1010 (2021).
X. Yu, X. Chen, M. Amrute-Nayak, E. Allgeyer, A. Zhao, H. Chenoweth, M. Clement, J. Harrison, C. Doreth, G. Sirinakis, T. Krieg, H. Zhou, H. Huang, K. Tokuraku, D. Johnston, Z. Mallat, X. Li, MARK4 controls ischaemic heart failure through microtubule detyrosination, Nature 594, 560 (2021).
J. Zhang, P. Byers, A. Erben, C. Frank, L. Schulte‐Spechtel, M. Heymann, D. Docheva, H. Huber, S. Sudhop, H. Clausen‐Schaumann, Single Cell Bioprinting with Ultrashort Laser Pulses, Advanced Functional Materials, 2100066 (2021).
P. Chastagner, F. Loria, J. Vargas, J. Tois, M. I Diamond, G. Okafo, C. Brou, C. Zurzolo, Fate and propagation of endogenously formed Tau aggregates in neuronal cells, EMBO Molecular Medicine 12, e12025 (2020).
M. Cortese, J.-Y. Lee, B. Cerikan, C. Neufeldt, V. Oorschot, S. Köhrer, J. Hennies, N. Schieber, P. Ronchi, G. Mizzon, I. Romero-Brey, R. Santarella-Mellwig, M. Schorb, M. Boermel, K. Mocaer, M. Beckwith, R. Templin, V. Gross, C. Pape, C. Tischer, J. Frankish, N. Horvat, V. Laketa, M. Stanifer, S. Boulant, A. Ruggieri, L. Chatel-Chaix, Y. Schwab, R. Bartenschlager, Integrative Imaging Reveals SARS-CoV-2-Induced Reshaping of Subcellular Morphologies, Cell Host & Microbe 28, 853-866.e5 (2020).
S. Galland, P. Martin, G. Fregni, I. Letovanec, I. Stamenkovic, Attenuation of the pro-inflammatory signature of lung cancer-derived mesenchymal stromal cells by statins, Cancer Letters 484, 50 (2020).
M. Konishi, N. Komura, Y. Hirose, Y. Suganuma, H.-N. Tanaka, A. Imamura, H. Ishida, K. Suzuki, H. Ando, Development of Fluorescent Ganglioside GD3 and GQ1b Analogs for Elucidation of Raft-Associated Interactions, The Journal of Organic Chemistry 85, 15998 (2020).
S. Liyanage, M. Yan, Quantification of binding affinity of glyconanomaterials with lectins, Chemical Communications 56, 13491 (2020).
W. Wang, Y. Kong, J. Jiang, X. Tian, S. Li, U. Akshath, C. Tiede, N. Hondow, A. Yu, Y. Guo, D. Zhou, Photon induced quantum yield regeneration of cap-exchanged CdSe/CdS quantum rods for ratiometric biosensing and cellular imaging, Nanoscale 12, 8647 (2020).
Y. Yano, S. Hanashima, H. Tsuchikawa, T. Yasuda, J. Slotte, E. London, M. Murata, Sphingomyelins and ent-Sphingomyelins Form Homophilic Nano-Subdomains within Liquid Ordered Domains, Biophysical Journal 119, 539 (2020).
I. Albertsson, J. Sjöholm, J. ter Beek, N. Watmough, J. Widengren, P. Ädelroth, Functional interactions between nitrite reductase and nitric oxide reductase from Paracoccus denitrificans, Scientific Reports 9, 1 (2019).
B. Breiner, K. Johnson, M. Stolarek, A.-L. Silva, A. Negrea, N. Bell, T. Isaac, M. Dethlefsen, J. Chana, L. Ibbotson, R. Palmer, J. Bush, A. Dunning, D. Love, O. Pachoumi, D. Kelly, A. Shibahara, M. Wu, M. Sosna, P. Dear, F. Tolle, E. Petrini, M. Amasio, L. Shelford, M. Saavedra, E. Sheridan, J. Kuleshova, G. Podd, B. Balmforth, C. Frayling, Single-molecule detection of deoxyribonucleoside triphosphates in microdroplets, Nucleic Acids Research 47, e101-e101 (2019).
R. Cai, C. Pan, A. Ghasemigharagoz, M. Todorov, B. Förstera, S. Zhao, H. Bhatia, A. Parra-Damas, L. Mrowka, D. Theodorou, M. Rempfler, A. Xavier, B. Kress, C. Benakis, H. Steinke, S. Liebscher, I. Bechmann, A. Liesz, B. Menze, M. Kerschensteiner, M. Nedergaard, A. Ertürk, Panoptic imaging of transparent mice reveals whole-body neuronal projections and skull-meninges connections, Nature Neuroscience 22, 317 (2019).
C. Combs, Sackett, D. L. A. N., Knutson, J. R. A. Y., A simple empirical algorithm for optimising depletion power and resolution for dye and system specific STED imaging, Journal of Microscopy 274, 168 (2019).
A. Descloux, K. Grußmayer, A. Radenovic, Parameter-free image resolution estimation based on decorrelation analysis, Nature Methods 16, 918 (2019).
M. Koikeda, N. Komura, H.-N. Tanaka, A. Imamura, H. Ishida, M. Kiso, H. Ando, Synthesis of ganglioside analogs containing fluorescently labeled GalNAc for single-molecule imaging, Journal of Carbohydrate Chemistry 38, 509 (2019).
S.-W. Lyu, J.-F. Wang, L. Chao, Constructing Supported Cell Membranes with Controllable Orientation, Scientific Reports 9, 1 (2019).
H.-Y. Tsai, H. Kim, M. Massey, K. Krause, W. Algar, Concentric FRET, Methods and Applications in Fluorescence 7, 42001 (2019).
S. Yang, S. Kim, D.-K. Kim, H. Jeon An, J. Bae Son, A. Hedén Gynnå, N. Ki Lee, Transcription and translation contribute to gene locus relocation to the nucleoid periphery in E. coli, Nature Communications 10, 5131 (2019).
W. Zeno, W. Snead, A. Thatte, J. Stachowiak, Structured and intrinsically disordered domains within Amphiphysin1 work together to sense and drive membrane curvature, Soft Matter 15, 8706 (2019).
K. Dorgans, V. Demais, Y. Bailly, B. Poulain, P. Isope, F. Doussau, Short-term plasticity at cerebellar granule cell to molecular layer interneuron synapses expands information processing, eLife 8, e41586 (2019).
N. Benito, E. Gaborieau, A. Diez, S. Kosar, L. Foucault, O. Raineteau, D. Jan, A Pool of Postnatally Generated Interneurons Persists in an Immature Stage in the Olfactory Bulb, Journal of Neuroscience 38, 9870 (2018).
M. Bird, R. Guerrini, J. Willets, J. Thompson, G. Caló, D. Lambert, Nociceptin/Orphanin FQ (N/OFQ) conjugated to ATTO594, British Journal of Pharmacology 175, 4496 (2018).
Y. Guo, W. Turnbull, D. Zhou, Probing Multivalent Protein–Carbohydrate Interactions by Quantum Dot-Förster Resonance Energy Transfer, Methods in Enzymology 598, 71 (2018).
R. Kasai, S. Ito, R. Awane, T. Fujiwara, A. Kusumi, The Class-A GPCR Dopamine D2 Receptor Forms Transient Dimers Stabilized by Agonists, Cell Biochemistry and Biophysics 76, 29 (2018).
M. Kinoshita, K. Suzuki, M. Murata, N. Matsumori, Evidence of lipid rafts based on the partition and dynamic behavior of sphingomyelins, Chemistry and Physics of Lipids 215, 84 (2018).
A. Leferink, D. Reis, C. van Blitterswijk, L. Moroni, An antibody based approach for multi-coloring osteogenic and chondrogenic proteins in tissue engineered constructs, Biomedical Materials 13, 44102 (2018).
M. Letellier, Z. Szíber, I. Chamma, C. Saphy, I. Papasideri, B. Tessier, M. Sainlos, K. Czöndör, O. Thoumine, A unique intracellular tyrosine in neuroligin-1 regulates AMPA receptor recruitment during synapse differentiation and potentiation, Nature Communications 9, 3979 (2018).
T. Mandal, M. Beck, N. Kirsten, M. Linden, C. Buske, Targeting murine leukemic stem cells by antibody functionalized mesoporous silica nanoparticles, Scientific Reports 8, 989 (2018).
A. Purkey, K. Woolfrey, K. Crosby, D. Stich, W. Chick, J. Aoto, M. Dell'Acqua, AKAP150 Palmitoylation Regulates Synaptic Incorporation of Ca2+-Permeable AMPA Receptors to Control LTP, Cell Reports 25, 974-987.e4 (2018).
C. Ricard, E. Arroyo, C. He, C. Portera-Cailliau, G. Lepousez, M. Canepari, D. Fiole, Two-photon probes for in vivo multicolor microscopy of the structure and signals of brain cells, Brain structure & function 223, 3011 (2018).
A. Ritzau‐Jost, L. Jablonski, J. Viotti, N. Lipstein, J. Eilers, S. Hallermann, Apparent calcium dependence of vesicle recruitment, The Journal of Physiology 596, 4693 (2018).
Z. Zhi, I. Hasan, A. Mechler, Formation of Alkanethiol Supported Hybrid Membranes Revisited, Biotechnology Journal 13, e1800101 (2018).
B. Martinac, Single-molecule FRET studies of ion channels, Progress in biophysics and molecular biology 130, 192 (2017).
L. Wang, H. Ta, C. Ullal, F. Wang, C. Wang, G. Dong, Aptamer functionalized silver clusters for STED microscopy, RSC Advances 7, 11821 (2017).
Y. Wang, Z. Bai, Q. Wang, G. Wang, Experimental Investigations on Fluorescence Excitation and Depletion of Carbon Dots, Journal of Fluorescence 27, 1435 (2017).
M. Beck, T. Mandal, C. Buske, M. Lindén, Serum Protein Adsorption Enhances Active Leukemia Stem Cell Targeting of Mesoporous Silica Nanoparticles, ACS applied materials & interfaces 9, 18566 (2017).
Y. Guo, I. Nehlmeier, E. Poole, C. Sakonsinsiri, N. Hondow, A. Brown, Q. Li, S. Li, J. Whitworth, Z. Li, A. Yu, R. Brydson, W. Turnbull, S. Pöhlmann, D. Zhou, Dissecting Multivalent Lectin-Carbohydrate Recognition Using Polyvalent Multifunctional Glycan-Quantum Dots, Journal of the American Chemical Society 139, 11833 (2017).
I. Hasan, A. Mechler, Nanoviscosity Measurements Revealing Domain Formation in Biomimetic Membranes, Analytical chemistry 89, 1855 (2017).
D. Nawrocka, K. Kornicka, J. Szydlarska, K. Marycz, Basic Fibroblast Growth Factor Inhibits Apoptosis and Promotes Proliferation of Adipose-Derived Mesenchymal Stromal Cells Isolated from Patients with Type 2 Diabetes by Reducing Cellular Oxidative Stress, Oxidative Medicine and Cellular Longevity 2017, 3027109 (2017).
Y. Nemoto, R. Morris, H. Hijikata, T. Tsunoyama, A. Shibata, R. Kasai, A. Kusumi, T. Fujiwara, Dynamic Meso-Scale Anchorage of GPI-Anchored Receptors in the Plasma Membrane, Cell Biochemistry and Biophysics 75, 399 (2017).
J. Sjöholm, J. Bergstrand, T. Nilsson, R. Šachl, C. Ballmoos, J. Widengren, P. Brzezinski, The lateral distance between a proton pump and ATP synthase determines the ATP-synthesis rate, Scientific Reports 7, 2926 (2017).
I. Chamma, M. Letellier, C. Butler, B. Tessier, K.-H. Lim, I. Gauthereau, D. Choquet, J.-B. Sibarita, S. Park, M. Sainlos, O. Thoumine, Mapping the dynamics and nanoscale organization of synaptic adhesion proteins using monomeric streptavidin, Nature Communications 7, 10773 (2016).
J. Chung, Y. Lee, H. Lam, J. Groves, Covalent Ras Dimerization on Membrane Surfaces through Photosensitized Oxidation, Journal of the American Chemical Society 138, 1800 (2016).
J. Dancourt, H. Zheng, F. Bottanelli, E. Allgeyer, J. Bewersdorf, M. Graham, X. Liu, J. Rothman, G. Lavieu, Small cargoes pass through synthetically glued Golgi stacks, FEBS Letters 590, 1675 (2016).
A. Gadok, D. Busch, S. Ferrati, B. Li, H. Smyth, J. Stachowiak, Connectosomes for Direct Molecular Delivery to the Cellular Cytoplasm, Journal of the American Chemical Society 138, 12833 (2016).
Y. Guo, C. Sakonsinsiri, I. Nehlmeier, M. Fascione, H. Zhang, W. Wang, S. Pöhlmann, W. Turnbull, D. Zhou, Compact, Polyvalent Mannose Quantum Dots as Sensitive, Ratiometric FRET Probes for Multivalent Protein–Ligand Interactions, Angewandte Chemie International Edition 55, 4738 (2016).
I. Hasan, A. Mechler, Formation of planar unilamellar phospholipid membranes on oxidized gold substrate, Biointerphases 11, 31017 (2016).
N. Komura, K. Suzuki, H. Ando, M. Konishi, M. Koikeda, A. Imamura, R. Chadda, T. Fujiwara, H. Tsuboi, R. Sheng, W. Cho, K. Furukawa, K. Furukawa, Y. Yamauchi, H. Ishida, A. Kusumi, M. Kiso, Raft-based interactions of gangliosides with a GPI-anchored receptor, Nature chemical biology 12, 402 (2016).
S. Meyer, B. Ozbay, M. Potcoava, E. Salcedo, D. Restrepo, E. Gibson, Super-resolution imaging of ciliary microdomains in isolated olfactory sensory neurons using a custom two-color stimulated emission depletion microscope, Journal of Biomedical Optics 21, 66017 (2016).
I. Delvendahl, I. Straub, S. Hallermann, Dendritic patch-clamp recordings from cerebellar granule cells demonstrate electrotonic compactness, Front. Cell. Neurosci. 9, article 93 (2015).
B. Ding, M. Qiu, R.J. Blaikie, Manipulating light absorption in dye-doped dielectric films on reflecting surfaces, Optics Express 22, 2596 (2014).
S. Chong, C. Chen et al., Mechanism of Transcriptional Bursting in Bacteria, Cell 158, 314 (2014).
M.J. Shoura, R.J.K.U. Ranatunga et al., Contribution of Fluorophore Dynamics and Solvation to Resonant Energy Transfer in Protein-DNA Complexes: A Molecular-Dynamics Study, Biophys. J. 107, 700 (2014).
K.O. Nagata, C. Nakada et al., ABCA1 dimer–monomer interconversion during HDL generation revealed by single-molecule imaging, PNAS 110, 5034 (2013).
V. Klang, A. Novak et al., Semi-Solid o/w Emulsions Based on Sucrose Stearates: Influence of Oil and Surfactant Type on Morphology and Rheological Properties, J. Dispersion Sci. Techn. 34, 322 (2013).
M.R. Williams, J.R. Fuchs et al., Cellular Mechanisms and Behavioral Consequences of Kv1.2 Regulation in the Rat Cerebellum, J. Neurosci. 32, 9228 (2012).
M.J. Shoura, A.A. Vetcher et al., Measurement of DNA-loop formation via Cre-mediated recombination, Nucl. Acids Res. 40, 7452 (2012).
